Nested message and enum types in Annotation.
Generated client implementations.
Nested message and enum types in BatchCreateAnnotationsResponse.
Nested message and enum types in CigarUnit.
Generated client implementations.
Nested message and enum types in ExportVariantSetRequest.
Nested message and enum types in ImportReadGroupSetsRequest.
Nested message and enum types in ImportVariantsRequest.
Nested message and enum types in ReadGroup.
Generated client implementations.
Generated client implementations.
Nested message and enum types in SearchAnnotationsRequest.
Generated client implementations.
Generated client implementations.
Nested message and enum types in Transcript.
Nested message and enum types in VariantAnnotation.
Generated client implementations.
Nested message and enum types in VariantSetMetadata.
An annotation describes a region of reference genome. The value of an
annotation may be one of several canonical types, supplemented by arbitrary
info tags. An annotation is not inherently associated with a specific
sample or individual (though a client could choose to use annotations in
this way). Example canonical annotation types are GENE and
VARIANT.
An annotation set is a logical grouping of annotations that share consistent
type information and provenance. Examples of annotation sets include ‘all
genes from refseq’, and ‘all variant annotations from ClinVar’.
A call set is a collection of variant calls, typically for one sample. It
belongs to a variant set.
A single CIGAR operation.
A bucket over which read coverage has been precomputed. A bucket corresponds
to a specific range of the reference sequence.
The CreateVariantSet request
A Dataset is a collection of genomic data.
The delete variant set request.
The read group set export request.
The variant data export request.
The variant set request.
The read group set import request.
The read group set import response.
The variant data import request.
The variant data import response.
A linear alignment can be represented by one CIGAR string. Describes the
mapped position and local alignment of the read to the reference.
The dataset list request.
The dataset list response.
An event that occurred during an [Operation][google.longrunning.Operation].
Metadata describing an [Operation][google.longrunning.Operation].
An abstraction for referring to a genomic position, in relation to some
already known reference. For now, represents a genomic position as a
reference name, a base number on that reference (0-based), and a
determination of forward or reverse strand.
A 0-based half-open genomic coordinate range for search requests.
A read alignment describes a linear alignment of a string of DNA to a
[reference sequence][google.genomics.v1.Reference], in addition to metadata
about the fragment (the molecule of DNA sequenced) and the read (the bases
which were read by the sequencer). A read is equivalent to a line in a SAM
file. A read belongs to exactly one read group and exactly one
[read group set][google.genomics.v1.ReadGroupSet].
A read group is all the data that’s processed the same way by the sequencer.
A read group set is a logical collection of read groups, which are
collections of reads produced by a sequencer. A read group set typically
models reads corresponding to one sample, sequenced one way, and aligned one
way.
A reference is a canonical assembled DNA sequence, intended to act as a
reference coordinate space for other genomic annotations. A single reference
might represent the human chromosome 1 or mitochandrial DNA, for instance. A
reference belongs to one or more reference sets.
ReferenceBound records an upper bound for the starting coordinate of
variants in a particular reference.
A reference set is a set of references which typically comprise a reference
assembly for a species, such as GRCh38 which is representative
of the human genome. A reference set defines a common coordinate space for
comparing reference-aligned experimental data. A reference set contains 1 or
more references.
The call set search request.
The call set search response.
The read group set search request.
The read group set search response.
The read search request.
The read search response.
The search variant sets request.
The search variant sets response.
The variant search request.
The variant search response.
The stream reads request.
The stream variants request.
A transcript represents the assertion that a particular region of the
reference genome may be transcribed as RNA.
A variant represents a change in DNA sequence relative to a reference
sequence. For example, a variant could represent a SNP or an insertion.
Variants belong to a variant set.
A call represents the determination of genotype with respect to a particular
variant. It may include associated information such as quality and phasing.
For example, a call might assign a probability of 0.32 to the occurrence of
a SNP named rs1234 in a call set with the name NA12345.
A variant set is a collection of call sets and variants. It contains summary
statistics of those contents. A variant set belongs to a dataset.
Metadata describes a single piece of variant call metadata.
These data include a top level key and either a single value string (value)
or a list of key-value pairs (info.)
Value and info are mutually exclusive.