Struct google_api_proto::google::genomics::v1::LinearAlignment

pub struct LinearAlignment {
    pub position: Option<Position>,
    pub mapping_quality: i32,
    pub cigar: Vec<CigarUnit>,
}

A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

Fields

position: Option<Position>

The position of this alignment.

mapping_quality: i32

The mapping quality of this alignment. Represents how likely the read maps to this position as opposed to other locations.

Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to the nearest integer.

cigar: Vec<CigarUnit>

Represents the local alignment of this sequence (alignment matches, indels, etc) against the reference.

Trait Implementations

impl Clone for LinearAlignment

fn clone(&self) -> LinearAlignment

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for LinearAlignment

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for LinearAlignment

fn default() -> Self

Returns the “default value” for a type.

impl Message for LinearAlignment

fn encoded_len(&self) -> usize

Returns the encoded length of the message without a length delimiter.

fn clear(&mut self)

Clears the message, resetting all fields to their default.

fn encode(&self, buf: &mut impl BufMut) -> Result<(), EncodeError>

where Self: Sized,

Encodes the message to a buffer.

fn encode_to_vec(&self) -> Vec<u8>

where Self: Sized,

Encodes the message to a newly allocated buffer.

fn encode_length_delimited( &self, buf: &mut impl BufMut, ) -> Result<(), EncodeError>

where Self: Sized,

Encodes the message with a length-delimiter to a buffer.

fn encode_length_delimited_to_vec(&self) -> Vec<u8>

where Self: Sized,

Encodes the message with a length-delimiter to a newly allocated buffer.

fn decode(buf: impl Buf) -> Result<Self, DecodeError>

where Self: Default,

Decodes an instance of the message from a buffer.

fn decode_length_delimited(buf: impl Buf) -> Result<Self, DecodeError>

where Self: Default,

Decodes a length-delimited instance of the message from the buffer.

fn merge(&mut self, buf: impl Buf) -> Result<(), DecodeError>

where Self: Sized,

Decodes an instance of the message from a buffer, and merges it into self.

fn merge_length_delimited(&mut self, buf: impl Buf) -> Result<(), DecodeError>

where Self: Sized,

Decodes a length-delimited instance of the message from buffer, and merges it into self.

impl PartialEq for LinearAlignment

fn eq(&self, other: &LinearAlignment) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for LinearAlignment