Struct google_api_proto::google::genomics::v1::ReadGroup

pub struct ReadGroup {
    pub id: String,
    pub dataset_id: String,
    pub name: String,
    pub description: String,
    pub sample_id: String,
    pub experiment: Option<Experiment>,
    pub predicted_insert_size: i32,
    pub programs: Vec<Program>,
    pub reference_set_id: String,
    pub info: BTreeMap<String, ListValue>,
}

A read group is all the data that’s processed the same way by the sequencer.

Fields

id: String

The server-generated read group ID, unique for all read groups. Note: This is different than the @RG ID field in the SAM spec. For that value, see [name][google.genomics.v1.ReadGroup.name].

dataset_id: String

The dataset to which this read group belongs.

name: String

The read group name. This corresponds to the @RG ID field in the SAM spec.

description: String

A free-form text description of this read group.

sample_id: String

A client-supplied sample identifier for the reads in this read group.

experiment: Option<Experiment>

The experiment used to generate this read group.

predicted_insert_size: i32

The predicted insert size of this read group. The insert size is the length the sequenced DNA fragment from end-to-end, not including the adapters.

programs: Vec<Program>

The programs used to generate this read group. Programs are always identical for all read groups within a read group set. For this reason, only the first read group in a returned set will have this field populated.

reference_set_id: String

The reference set the reads in this read group are aligned to.

info: BTreeMap<String, ListValue>

A map of additional read group information. This must be of the form map<string, string[]> (string key mapping to a list of string values).

Trait Implementations

impl Clone for ReadGroup

fn clone(&self) -> ReadGroup

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ReadGroup

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for ReadGroup

fn default() -> Self

Returns the “default value” for a type.

impl Message for ReadGroup

fn encoded_len(&self) -> usize

Returns the encoded length of the message without a length delimiter.

fn clear(&mut self)

Clears the message, resetting all fields to their default.

fn encode(&self, buf: &mut impl BufMut) -> Result<(), EncodeError>

where Self: Sized,

Encodes the message to a buffer.

fn encode_to_vec(&self) -> Vec<u8>

where Self: Sized,

Encodes the message to a newly allocated buffer.

fn encode_length_delimited( &self, buf: &mut impl BufMut, ) -> Result<(), EncodeError>

where Self: Sized,

Encodes the message with a length-delimiter to a buffer.

fn encode_length_delimited_to_vec(&self) -> Vec<u8>

where Self: Sized,

Encodes the message with a length-delimiter to a newly allocated buffer.

fn decode(buf: impl Buf) -> Result<Self, DecodeError>

where Self: Default,

Decodes an instance of the message from a buffer.

fn decode_length_delimited(buf: impl Buf) -> Result<Self, DecodeError>

where Self: Default,

Decodes a length-delimited instance of the message from the buffer.

fn merge(&mut self, buf: impl Buf) -> Result<(), DecodeError>

where Self: Sized,

Decodes an instance of the message from a buffer, and merges it into self.

fn merge_length_delimited(&mut self, buf: impl Buf) -> Result<(), DecodeError>

where Self: Sized,

Decodes a length-delimited instance of the message from buffer, and merges it into self.

impl PartialEq for ReadGroup

fn eq(&self, other: &ReadGroup) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for ReadGroup